freebsd-ports/biology/exonerate/pkg-descr

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Exonerate is a tool for various types of pairwise sequence comparison.
It allows us to align sequences using many alignment models including
est2genome, protein2genome, and so on.
Citation:
Slater, G. S. C. and Birney, E. (2005) Automated generation of heuristics
for biological sequence comparison. BMC Bioinformatics 6:31.